Browsing Department of Applied Plant Science by Subject "GBS-pipeline;Paired-end reads;Polyploid;SNP calling"

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UGbS-Flex, a novel bioinformatics pipeline for imputation-free SNP discovery in polyploids without a reference genome: finger millet as a case study

Peng Qi, Davis Gimode, Dipnarayan Saha, Stephan Schröder, Debkanta Chakraborty, Xuewen Wang, Mathews M Dida, Russell L Malmberg, Katrien M Devos (BioMed Central, 2018-12-01)

Research on orphan crops is often hindered by a lack of genomic resources. With the advent of affordable sequencing technologies, genotyping an entire genome or, for large-genome species, a representative fraction of the ...